org.expasy.mzjava.proteomics.ms.consensus

Class PeptideFragmentAnnotator

java.lang.Object

org.expasy.mzjava.core.ms.peaklist.AbstractPeakProcessor<PepLibPeakAnnotation,PepLibPeakAnnotation>

org.expasy.mzjava.proteomics.ms.consensus.PeptideFragmentAnnotator

All Implemented Interfaces:

PeakProcessor<PepLibPeakAnnotation,PepLibPeakAnnotation>, PeakSink<PepLibPeakAnnotation>, PeakSource<PepLibPeakAnnotation>

public class PeptideFragmentAnnotator
extends AbstractPeakProcessor<PepLibPeakAnnotation,PepLibPeakAnnotation>

Peak sink that collects the peaks into a LibrarySpectrum and annotates the peaks

Version:

sqrt -1

Author:

Oliver Horlacher

Field Summary

Fields inherited from class org.expasy.mzjava.core.ms.peaklist.AbstractPeakProcessor

sink

Constructor Summary

Constructors

Constructor and Description
PeptideFragmentAnnotator(Tolerance tolerance, PeptideSpectrum theoreticalSpectrum)

Method Summary

Methods

Modifier and Type	Method and Description
void	processPeak(double mz, double intensity, List<PepLibPeakAnnotation> annotations) Process the peak

Methods inherited from class org.expasy.mzjava.core.ms.peaklist.AbstractPeakProcessor

end, setSink, start

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PeptideFragmentAnnotator

public PeptideFragmentAnnotator(Tolerance tolerance,
                        PeptideSpectrum theoreticalSpectrum)

Method Detail

processPeak

public void processPeak(double mz,
               double intensity,
               List<PepLibPeakAnnotation> annotations)

Description copied from interface: PeakSink

Process the peak

Parameters:

mz - the peak's m/z

intensity - the peak's intensity

annotations - the peak's annotations