org.expasy.mzjava.proteomics.mol.modification.unimod

Class UnimodMod.Builder

java.lang.Object

org.expasy.mzjava.proteomics.mol.modification.unimod.UnimodMod.Builder

Enclosing class:

UnimodMod

public static final class UnimodMod.Builder
extends Object

Constructor Summary

Constructors

Constructor and Description
UnimodMod.Builder()

Method Summary

Methods

Modifier and Type	Method and Description
UnimodMod	build() Build the UnimodMod.
UnimodMod.Builder	setApproved(boolean approved) Set the approved flag
UnimodMod.Builder	setComposition(gnu.trove.map.TObjectIntMap<Atom> atomCountMap) Set the atom counter map that contains the composition
UnimodMod.Builder	setFullName(String fullName) Set the full name.
UnimodMod.Builder	setInterimName(String interimName) Set the interim name.
UnimodMod.Builder	setNeutralLosses(List<NeutralLoss> neutralLosses) Set the neutral loss list
UnimodMod.Builder	setPrecursorNeutralLosses(List<NeutralLoss> precursorNeutralLosses) Set the precursor neutral loss list
UnimodMod.Builder	setPsiMsName(String psiMsName) Set the psi ms name
UnimodMod.Builder	setRecordId(int recordId) Set the record id
UnimodMod.Builder	setSites(List<String> sites) Set the sites list

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

UnimodMod.Builder

public UnimodMod.Builder()

Method Detail

setApproved

public UnimodMod.Builder setApproved(boolean approved)

Set the approved flag

Parameters:

approved - the approved flag

Returns:

the builder

setRecordId

public UnimodMod.Builder setRecordId(int recordId)

Set the record id

Parameters:

recordId - the record id

Returns:

the builder

setInterimName

public UnimodMod.Builder setInterimName(String interimName)

Set the interim name.

Parameters:

interimName - the interim name

Returns:

the builder

setPsiMsName

public UnimodMod.Builder setPsiMsName(String psiMsName)

Set the psi ms name

Parameters:

psiMsName - the psi ms name

Returns:

the builder

setFullName

public UnimodMod.Builder setFullName(String fullName)

Set the full name.

Parameters:

fullName - the full name

Returns:

the builder

setComposition

public UnimodMod.Builder setComposition(gnu.trove.map.TObjectIntMap<Atom> atomCountMap)

Set the atom counter map that contains the composition

Parameters:

atomCountMap - the atom counter map

Returns:

the builder

setSites

public UnimodMod.Builder setSites(List<String> sites)

Set the sites list

Parameters:

sites - the list of modification sites

Returns:

the builder

setNeutralLosses

public UnimodMod.Builder setNeutralLosses(List<NeutralLoss> neutralLosses)

Set the neutral loss list

Parameters:

neutralLosses - the neutral loss list

Returns:

the builder

setPrecursorNeutralLosses

public UnimodMod.Builder setPrecursorNeutralLosses(List<NeutralLoss> precursorNeutralLosses)

Set the precursor neutral loss list

Parameters:

precursorNeutralLosses - the presursor neutral loss list

Returns:

the builder

build

public UnimodMod build()

Build the UnimodMod.

Returns:

the new UnimodMod