org.expasy.mzjava.glycomics.io.mol.glycoct

Class DefaultGlycoCtResolver

java.lang.Object

org.expasy.mzjava.glycomics.io.mol.glycoct.DefaultGlycoCtResolver

All Implemented Interfaces:

GlycoCtResolver

public class DefaultGlycoCtResolver
extends Object
implements GlycoCtResolver

Version:

sqrt -1.

Author:

Davide Alocci, julien

Field Summary

Fields

Modifier and Type	Field and Description
static String	PROPERTY_GLYCOCT_MONOSACCHARIDES
static String	PROPERTY_GLYCOCT_SUBSTITUENTS

Constructor Summary

Constructors

Constructor and Description
DefaultGlycoCtResolver()

Method Summary

Methods

Modifier and Type	Method and Description
com.google.common.base.Optional<Anomericity>	getAnomericity(String glycoCtCode) Returns the appropriate Anomericity instance for the given glycoct code.
com.google.common.base.Optional<Composition>	getLinkageComposition(String glycoCtCode) Returns the appropriate LinkageComposition instance for the given GlycoCT code.
Monosaccharide	getMonosaccharide(String glycoCtCode) Search for the monosaccharide that resolves the GlycoCT code in input.
Substituent	getSubstituent(String glycoCtCode) Search for the substituent that resolves the GlycoCT code in input.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

PROPERTY_GLYCOCT_MONOSACCHARIDES

public static final String PROPERTY_GLYCOCT_MONOSACCHARIDES

See Also:

Constant Field Values

PROPERTY_GLYCOCT_SUBSTITUENTS

public static final String PROPERTY_GLYCOCT_SUBSTITUENTS

See Also:

Constant Field Values

Constructor Detail

DefaultGlycoCtResolver

public DefaultGlycoCtResolver()

Method Detail

getMonosaccharide

public Monosaccharide getMonosaccharide(String glycoCtCode)

Search for the monosaccharide that resolves the GlycoCT code in input.

The method throw an IllegalStateException if there is no monosaccharide that resolves the GlycoCT Code

Specified by:

getMonosaccharide in interface GlycoCtResolver

Parameters:

glycoCtCode - GlycoCT code to resolve.

Returns:

A monosaccharide object with the specified GlycoCT Code.

getSubstituent

public Substituent getSubstituent(String glycoCtCode)

Search for the substituent that resolves the GlycoCT code in input.

The method throw an IllegalStateException if there is no substituent that resolves the GlycoCT Code

Specified by:

getSubstituent in interface GlycoCtResolver

Parameters:

glycoCtCode - GlycoCT Code to resolve.

Returns:

A substituent object with the specified GlycoCT Code.

getAnomericity

public com.google.common.base.Optional<Anomericity> getAnomericity(String glycoCtCode)

Returns the appropriate Anomericity instance for the given glycoct code.

Specified by:

getAnomericity in interface GlycoCtResolver

Parameters:

glycoCtCode - the GlycoCT code to resolve.

getLinkageComposition

public com.google.common.base.Optional<Composition> getLinkageComposition(String glycoCtCode)

Returns the appropriate LinkageComposition instance for the given GlycoCT code.

Specified by:

getLinkageComposition in interface GlycoCtResolver

Parameters:

glycoCtCode - the GlycoCT code to resolve.