Package org.expasy.mzjava.core.ms.spectrasim

Interface Summary

Interface	Description
SimFunc<X extends PeakAnnotation,Y extends PeakAnnotation>	Interface for any class that can calculate the similarity between two PeakLists

Class Summary

Class	Description
AbstractSimFunc<X extends PeakAnnotation,Y extends PeakAnnotation>	Abstract similarity function.
DpSimFunc<X extends PeakAnnotation,Y extends PeakAnnotation>	Calculates the similarity between two PeakLists using the dot product (dp).
McNdpSimFunc<X extends PeakAnnotation,Y extends PeakAnnotation>	Calculates PeakList similarity using the Mean Centered Normalized Dot Product similarity function Olson et.al..
NdpSimFunc<X extends PeakAnnotation,Y extends PeakAnnotation>	Calculates the similarity between two PeakLists using the normalized dot product (ndp).
PearsonsSimFunc<X extends PeakAnnotation,Y extends PeakAnnotation>	Calculates PeakList similarity using the Pearson's correlation coefficient.
PspcSimFunc<X extends PeakAnnotation,Y extends PeakAnnotation>	Poisson shared peak count similarity function.
SharedPeakSimFunc<X extends PeakAnnotation,Y extends PeakAnnotation>	The shared peak count is the calculated using the formula
WeightedPearsonsSimFunc<X extends PeakAnnotation,Y extends PeakAnnotation>	Calculates PeakList similarity using the weighted Pearson's correlation coefficient.