PeriodicTable (MzJava 1.1.1-SNAPSHOT API)

java.lang.Object
- org.expasy.mzjava.core.mol.PeriodicTable

```
public class PeriodicTable
extends Object
```
Periodic table of the elements. Is used to get Atom instances.

Version:

1.0

Author:

nikitin, Oliver Horlacher

Field Summary

Fields
Modifier and Type	Field and Description
`static Atom`	`C`
`static double`	`C_MASS`
`static Atom`	`C13`
`static double`	`C13_MASS`
`static Atom`	`Ca`
`static double`	`Ca_MASS`
`static Atom`	`Cu`
`static double`	`Cu_MASS`
`static double`	`ELECTRON_MASS`
`static Atom`	`Fe`
`static double`	`Fe_MASS`
`static Atom`	`H`
`static double`	`H_MASS`
`static Atom`	`I`
`static double`	`I_MASS`
`static Atom`	`K`
`static double`	`K_MASS`
`static Atom`	`Mg`
`static double`	`Mg_MASS`
`static Atom`	`Mn`
`static double`	`Mn_MASS`
`static Atom`	`N`
`static double`	`N_MASS`
`static Atom`	`Na`
`static double`	`Na_MASS`
`static Atom`	`O`
`static double`	`O_MASS`
`static Atom`	`P`
`static double`	`P_MASS`
`static Atom`	`S`
`static double`	`S_MASS`
`static Atom`	`Zn`
`static double`	`Zn_MASS`

Method Summary

Methods
Modifier and Type	Method and Description
`Atom`	`getAtom(AtomicSymbol atomicSymbol)` Return the default isotope for the `atomicSymbol`
`Atom`	`getAtom(AtomicSymbol atomicSymbol, int massNumber)` Return the atom for the atomicSymbol with the number of neutrons given by massNumber
`Atom`	`getAtom(String symbol)` Parse the symbol and return the corresponding Atom.
`List<Atom>`	`getAtoms(AtomicSymbol atomicSymbol)` Return all the atoms for the given symbol sorted by mass For example AtomicSymbol.C will return {C12, C13, C14}
`static PeriodicTable`	`getInstance()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ELECTRON_MASS
```
public static final double ELECTRON_MASS
```
See Also:
Constant Field Values

H_MASS
```
public static final double H_MASS
```

O_MASS
```
public static final double O_MASS
```

C_MASS
```
public static final double C_MASS
```

C13_MASS
```
public static final double C13_MASS
```

N_MASS
```
public static final double N_MASS
```

P_MASS
```
public static final double P_MASS
```

S_MASS
```
public static final double S_MASS
```

K_MASS
```
public static final double K_MASS
```

Ca_MASS
```
public static final double Ca_MASS
```

Fe_MASS
```
public static final double Fe_MASS
```

Mg_MASS
```
public static final double Mg_MASS
```

Na_MASS
```
public static final double Na_MASS
```

Zn_MASS
```
public static final double Zn_MASS
```

Mn_MASS
```
public static final double Mn_MASS
```

Cu_MASS
```
public static final double Cu_MASS
```

I_MASS
```
public static final double I_MASS
```

H
```
public static final Atom H
```

O
```
public static final Atom O
```

C
```
public static final Atom C
```

C13
```
public static final Atom C13
```

N
```
public static final Atom N
```

P
```
public static final Atom P
```

S
```
public static final Atom S
```

K
```
public static final Atom K
```

Ca
```
public static final Atom Ca
```

Fe
```
public static final Atom Fe
```

Mg
```
public static final Atom Mg
```

Na
```
public static final Atom Na
```

Zn
```
public static final Atom Zn
```

Mn
```
public static final Atom Mn
```

Cu
```
public static final Atom Cu
```

I
```
public static final Atom I
```

Method Detail
- getInstance
```
public static PeriodicTable getInstance()
```
- getAtom
```
public Atom getAtom(AtomicSymbol atomicSymbol,
           int massNumber)
```
  Return the atom for the atomicSymbol with the number of neutrons given by massNumber
  
  Parameters:
  atomicSymbol - the atomic symbol
  massNumber - the number of neutrons
  
  Returns:
  the atom for the atomicSymbol with the number of neutrons given by massNumber
- getAtom
```
public Atom getAtom(AtomicSymbol atomicSymbol)
```
  Return the default isotope for the atomicSymbol
  
  Parameters:
  atomicSymbol - the atomic symbol
  
  Returns:
  the default isotope for the atomicSymbol
- getAtom
```
public Atom getAtom(String symbol)
```
  Parse the symbol and return the corresponding Atom. For example,
  - if symbol C given then an instance of Atom C[12] returned
  - if symbol C[13] given then an instance of Atom C[13] instance returned
  Atom definition
  An atom is defined by a symbol with an optional explicit mass number (nucleon number)
  Example: hydrogen atom could be described like "H", "H[1]"
  Parameters:
  symbol - the symbol
  
  Returns:
  the atom for the symbol
  
  Throws:
  
  IllegalArgumentException - if bad element format
- getAtoms
```
public List<Atom> getAtoms(AtomicSymbol atomicSymbol)
```
  Return all the atoms for the given symbol sorted by mass
  For example AtomicSymbol.C will return {C12, C13, C14}
  
  Parameters:
  atomicSymbol - the symbol
  
  Returns:
  all the atoms for the given symbol sorted by mass

Class PeriodicTable

Field Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

ELECTRON_MASS

H_MASS

O_MASS

C_MASS

C13_MASS

N_MASS

P_MASS

S_MASS

K_MASS

Ca_MASS

Fe_MASS

Mg_MASS

Na_MASS

Zn_MASS

Mn_MASS

Cu_MASS

I_MASS

H

O

C

C13

N

P

S

K

Ca

Fe

Mg

Na

Zn

Mn

Cu

I

Method Detail

getInstance

getAtom

getAtom

getAtom

Atom definition

getAtoms